Package Bio :: Package Prosite :: Module Prodoc
[hide private]
[frames] | no frames]

Module Prodoc

source code

This module provides code to work with the prosite.doc file from Prosite. http://www.expasy.ch/prosite/

Tested with: Release 15.0, July 1998 Release 16.0, July 1999

Classes: Record Holds Prodoc data. Reference Holds data from a Prodoc reference. Iterator Iterates over entries in a Prodoc file. Dictionary Accesses a Prodoc file using a dictionary interface. ExPASyDictionary Accesses Prodoc records from ExPASy. RecordParser Parses a Prodoc record into a Record object.

_Scanner Scans Prodoc-formatted data. _RecordConsumer Consumes Prodoc data to a Record object.

Functions: index_file Index a Prodoc file for a Dictionary. _extract_record Extract Prodoc data from a web page.

Classes [hide private]
  Record
Holds information from a Prodoc record.
  Reference
Holds information from a Prodoc citation.
  Iterator
Returns one record at a time from a Prodoc file.
  Dictionary
Accesses a Prodoc file using a dictionary interface.
  ExPASyDictionary
Access PRODOC at ExPASy using a read-only dictionary interface.
  RecordParser
Parses Prodoc data into a Record object.
  _Scanner
Scans Prodoc-formatted data.
  _RecordConsumer
Consumer that converts a Prodoc record to a Record object.
Functions [hide private]
 
index_file(filename, indexname, rec2key=None)
Index a Prodoc file.
source code
str
_extract_record(handle)
Extract PRODOC data from a web page.
source code
Variables [hide private]
  xml_support = 1
Function Details [hide private]

index_file(filename, indexname, rec2key=None)

source code 

Index a Prodoc file. filename is the name of the file. indexname is the name of the dictionary. rec2key is an optional callback that takes a Record and generates a unique key (e.g. the accession number) for the record. If not specified, the id name will be used.

_extract_record(handle)

source code 

Extract PRODOC data from a web page. Raises a ValueError if no data was found in the web page.

Returns: str