Package Bio :: Package SeqIO :: Module InsdcIO
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Module InsdcIO

source code

Functions [hide private]
 
GenBankIterator(handle)
Breaks up a Genbank file into SeqRecord objects
source code
 
EmblIterator(handle)
Breaks up an EMBL file into SeqRecord objects
source code
 
GenBankCdsFeatureIterator(handle, alphabet=ProteinAlphabet())
Breaks up a Genbank file into SeqRecord objects for each CDS feature
source code
 
EmblCdsFeatureIterator(handle, alphabet=ProteinAlphabet())
Breaks up a EMBL file into SeqRecord objects for each CDS feature
source code
Function Details [hide private]

GenBankIterator(handle)

source code 

Breaks up a Genbank file into SeqRecord objects

Every section from the LOCUS line to the terminating // becomes a single SeqRecord with associated annotation and features.

Note that for genomes or chromosomes, there is typically only one record.

EmblIterator(handle)

source code 

Breaks up an EMBL file into SeqRecord objects

Every section from the LOCUS line to the terminating // becomes a single SeqRecord with associated annotation and features.

Note that for genomes or chromosomes, there is typically only one record.

GenBankCdsFeatureIterator(handle, alphabet=ProteinAlphabet())

source code 

Breaks up a Genbank file into SeqRecord objects for each CDS feature

Every section from the LOCUS line to the terminating // can contain many CDS features. These are returned as with the stated amino acid translation sequence (if given).

EmblCdsFeatureIterator(handle, alphabet=ProteinAlphabet())

source code 

Breaks up a EMBL file into SeqRecord objects for each CDS feature

Every section from the LOCUS line to the terminating // can contain many CDS features. These are returned as with the stated amino acid translation sequence (if given).