Module Motif
source code
Find and deal with motifs in biological sequence data.
Representing DNA (or RNA or proteins) in a neural network can be
difficult since input sequences can have different lengths. One way to
get around this problem is to deal with sequences by finding common
motifs, and counting the number of times those motifs occur in a
sequence. This information can then be used for creating the neural
networks, with occurances of motifs going into the network instead of raw
sequence data.
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MotifFinder
Find motifs in a set of Sequence Records.
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MotifCoder
Convert motifs and a sequence into neural network representations.
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