Package Bio :: Package Medline :: Module nlmmedline_031101_format
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Module nlmmedline_031101_format

source code

nlmmedline_xml_format.py

A Martel format to parse the NLM's XML format for Medline.

http://www.nlm.nih.gov/databases/dtd/nlmmedline_031101.dtd http://www.nlm.nih.gov/databases/dtd/nlmmedlinecitation_031101.dtd http://www.nlm.nih.gov/databases/dtd/nlmcommon_031101.dtd

Formats: citation_format Format for one MedlineCitation. format Format for a whole file.

Functions [hide private]
 
_start_elem(element, *attrs) source code
 
_end_elem(element) source code
 
simple_elem(element, *attrs)
Create a Martel Expression in this module's namespace that will recognize an XML element in the form of: <element>data</element>
source code
 
group_elem(element, expr, *attrs) source code
Variables [hide private]
  OSpaces = Opt(Spaces())
  personal_name = LastName+ Opt(Alt(ForeName, FirstName+ Opt(Mid...
  author_name = Alt(personal_name, CollectiveName)
  imprint_type = Alt(Str("Current"), Str("Original"))
  indexing_status = Alt(Str("Ceased-publication"), Str("Continue...
  elements = ['Year', 'Month', 'Day', 'Season', 'MedlineDate', '...
  normal_date = Year+ Month+ Day+ Opt(Hour+ Opt(Minute+ Opt(Seco...
  pub_date = Alt((Year+ Opt(Alt((Month+ Opt(Day)), Season))), Me...
  Ref_template = RefSource+ Opt(Alt(PMID, MedlineID))+ Opt(Note)
  space = Any(" \t")
  DeleteCitation_start = Rep(space)+ Str("<DeleteCitation>")+ An...
  DeleteCitation_end = Rep(space)+ Str("</DeleteCitation>")+ Any...
  MedlineCitationSet_end = Str("</MedlineCitationSet>")+ Opt(Any...
  xml_version = Str('<?xml version="1.0"?>')+ AnyEol()
  doctype = Str('<!DOCTYPE PubmedArticleSet PUBLIC "-//NLM//DTD ...
  pubmed_query_format = xml_version+ doctype+ PubmedArticleSet
  DOCTYPE = Str("<!DOCTYPE")+ Re(r"[^>]+")+ Str(">")+ AnyEol()
  citation_format = MedlineCitation
  header_format = Group("header", DOCTYPE+ MedlineCitationSet_st...
  footer_format = Opt(DeleteCitation)+ MedlineCitationSet_end
  format = HeaderFooter("MedlineFile", {}, header_format, Record...
  Abstract = <Martel.Expression.Group instance at 0x5962a28>
  AbstractText = <Martel.Expression.Seq instance at 0x59627e8>
  Abstract_end = <Martel.Expression.Seq instance at 0x59629e0>
  Abstract_start = <Martel.Expression.Seq instance at 0x5962908>
  AccessionNumber = <Martel.Expression.Seq instance at 0x596c758>
  AccessionNumberList = <Martel.Expression.Group instance at 0x5...
  AccessionNumberList_end = <Martel.Expression.Seq instance at 0...
  AccessionNumberList_start = <Martel.Expression.Seq instance at...
  Acronym = <Martel.Expression.Seq instance at 0x596a830>
  Affiliation = <Martel.Expression.Seq instance at 0x5965cf8>
  Agency = <Martel.Expression.Seq instance at 0x596aa70>
  Article = <Martel.Expression.Group instance at 0x596db00>
  ArticleId = <Martel.Expression.Seq instance at 0x597c128>
  ArticleIdList = <Martel.Expression.Group instance at 0x597c368>
  ArticleIdList_end = <Martel.Expression.Seq instance at 0x597c320>
  ArticleIdList_start = <Martel.Expression.Seq instance at 0x597...
  ArticleTitle = <Martel.Expression.Seq instance at 0x59679e0>
  Article_end = <Martel.Expression.Seq instance at 0x596dab8>
  Article_start = <Martel.Expression.Seq instance at 0x596d9e0>
  Author = <Martel.Expression.Group instance at 0x5965f38>
  AuthorList = <Martel.Expression.Group instance at 0x5966638>
  AuthorList_end = <Martel.Expression.Seq instance at 0x59665f0>
  AuthorList_start = <Martel.Expression.Seq instance at 0x5966560>
  Author_end = <Martel.Expression.Seq instance at 0x5965ef0>
  Author_start = <Martel.Expression.Seq instance at 0x5965e18>
  Book = <Martel.Expression.Group instance at 0x59681b8>
  Book_end = <Martel.Expression.Seq instance at 0x5968170>
  Book_start = <Martel.Expression.Seq instance at 0x5968098>
  Chemical = <Martel.Expression.Group instance at 0x5972f38>
  ChemicalList = <Martel.Expression.Group instance at 0x5974200>
  ChemicalList_end = <Martel.Expression.Seq instance at 0x59741b8>
  ChemicalList_start = <Martel.Expression.Seq instance at 0x5974...
  Chemical_end = <Martel.Expression.Seq instance at 0x5972ef0>
  Chemical_start = <Martel.Expression.Seq instance at 0x5972e18>
  CitationSubset = <Martel.Expression.Seq instance at 0x5974518>
  Coden = <Martel.Expression.Seq instance at 0x59693f8>
  CollectionTitle = <Martel.Expression.Seq instance at 0x59677a0>
  CollectiveName = <Martel.Expression.Seq instance at 0x595f878>
  CommentIn = <Martel.Expression.Group instance at 0x596efc8>
  CommentIn_end = <Martel.Expression.Seq instance at 0x596ef80>
  CommentIn_start = <Martel.Expression.Seq instance at 0x596eea8>
  CommentOn = <Martel.Expression.Group instance at 0x596ed40>
  CommentOn_end = <Martel.Expression.Seq instance at 0x596ecf8>
  CommentOn_start = <Martel.Expression.Seq instance at 0x596ec20>
  CommentsCorrections = <Martel.Expression.Group instance at 0x5...
  CommentsCorrections_end = <Martel.Expression.Seq instance at 0...
  CommentsCorrections_start = <Martel.Expression.Seq instance at...
  CopyrightInformation = <Martel.Expression.Seq instance at 0x59...
  Country = <Martel.Expression.Seq instance at 0x5968488>
  DataBank = <Martel.Expression.Group instance at 0x596cea8>
  DataBankList = <Martel.Expression.Group instance at 0x596d5a8>
  DataBankList_end = <Martel.Expression.Seq instance at 0x596d560>
  DataBankList_start = <Martel.Expression.Seq instance at 0x596d...
  DataBankName = <Martel.Expression.Seq instance at 0x596cc68>
  DataBank_end = <Martel.Expression.Seq instance at 0x596ce60>
  DataBank_start = <Martel.Expression.Seq instance at 0x596cd88>
  DateCompleted = <Martel.Expression.Group instance at 0x5979368>
  DateCompleted_end = <Martel.Expression.Seq instance at 0x5979320>
  DateCompleted_start = <Martel.Expression.Seq instance at 0x597...
  DateCreated = <Martel.Expression.Group instance at 0x59795f0>
  DateCreated_end = <Martel.Expression.Seq instance at 0x59795a8>
  DateCreated_start = <Martel.Expression.Seq instance at 0x59794d0>
  DateOfElectronicPublication = <Martel.Expression.Seq instance ...
  DateRevised = <Martel.Expression.Group instance at 0x59790e0>
  DateRevised_end = <Martel.Expression.Seq instance at 0x5979098>
  DateRevised_start = <Martel.Expression.Seq instance at 0x5976f80>
  Day = <Martel.Expression.Seq instance at 0x5961488>
  DeleteCitation = <Martel.Expression.Group instance at 0x5978998>
  Descriptor = <Martel.Expression.Seq instance at 0x5964368>
  DescriptorName = <Martel.Expression.Seq instance at 0x59649e0>
  EndPage = <Martel.Expression.Seq instance at 0x59654d0>
  ErratumFor = <Martel.Expression.Group instance at 0x5970518>
  ErratumFor_end = <Martel.Expression.Seq instance at 0x59704d0>
  ErratumFor_start = <Martel.Expression.Seq instance at 0x59703f8>
  ErratumIn = <Martel.Expression.Group instance at 0x5970290>
  ErratumIn_end = <Martel.Expression.Seq instance at 0x5970248>
  ErratumIn_start = <Martel.Expression.Seq instance at 0x5970170>
  FirstName = <Martel.Expression.Seq instance at 0x595eab8>
  ForeName = <Martel.Expression.Seq instance at 0x595ecf8>
  GeneSymbol = <Martel.Expression.Seq instance at 0x59725f0>
  GeneSymbolList = <Martel.Expression.Group instance at 0x59727e8>
  GeneSymbolList_end = <Martel.Expression.Seq instance at 0x5972...
  GeneSymbolList_start = <Martel.Expression.Seq instance at 0x59...
  GeneralNote = <Martel.Expression.Seq instance at 0x5974bd8>
  Grant = <Martel.Expression.Group instance at 0x596ad40>
  GrantID = <Martel.Expression.Seq instance at 0x596a5f0>
  GrantList = <Martel.Expression.Group instance at 0x596c440>
  GrantList_end = <Martel.Expression.Seq instance at 0x596c3f8>
  GrantList_start = <Martel.Expression.Seq instance at 0x596c368>
  Grant_end = <Martel.Expression.Seq instance at 0x596acf8>
  Grant_start = <Martel.Expression.Seq instance at 0x596ac20>
  History = <Martel.Expression.Group instance at 0x597a758>
  History_end = <Martel.Expression.Seq instance at 0x597a710>
  History_start = <Martel.Expression.Seq instance at 0x597a638>
  Hour = <Martel.Expression.Seq instance at 0x5961b48>
  ISOAbbreviation = <Martel.Expression.Seq instance at 0x59691b8>
  ISSN = <Martel.Expression.Seq instance at 0x5969fc8>
  Initials = <Martel.Expression.Seq instance at 0x595f3f8>
  Investigator = <Martel.Expression.Group instance at 0x5974dd0>
  InvestigatorList = <Martel.Expression.Group instance at 0x5975...
  InvestigatorList_end = <Martel.Expression.Seq instance at 0x59...
  InvestigatorList_start = <Martel.Expression.Seq instance at 0x...
  Investigator_end = <Martel.Expression.Seq instance at 0x5974d88>
  Investigator_start = <Martel.Expression.Seq instance at 0x5974...
  Issue = <Martel.Expression.Seq instance at 0x5969638>
  Journal = <Martel.Expression.Group instance at 0x596a320>
  JournalIssue = <Martel.Expression.Group instance at 0x5969cf8>
  JournalIssue_end = <Martel.Expression.Seq instance at 0x5969cb0>
  JournalIssue_start = <Martel.Expression.Seq instance at 0x5969...
  Journal_end = <Martel.Expression.Seq instance at 0x596a2d8>
  Journal_start = <Martel.Expression.Seq instance at 0x596a200>
  Keyword = <Martel.Expression.Seq instance at 0x5976128>
  KeywordList = <Martel.Expression.Group instance at 0x5976710>
  KeywordList_end = <Martel.Expression.Seq instance at 0x59766c8>
  KeywordList_start = <Martel.Expression.Seq instance at 0x5976638>
  Language = <Martel.Expression.Seq instance at 0x5966950>
  LastName = <Martel.Expression.Seq instance at 0x595f1b8>
  MedlineCitation = MedlineCitation
  MedlineCitationSet = <Martel.Expression.Group instance at 0x59...
  MedlineCitationSet_start = <Martel.Expression.Seq instance at ...
  MedlineCitation_end = <Martel.Expression.Seq instance at 0x597...
  MedlineCitation_start = <Martel.Expression.Seq instance at 0x5...
  MedlineCode = <Martel.Expression.Seq instance at 0x5968908>
  MedlineDate = <Martel.Expression.Seq instance at 0x5961908>
  MedlineID = <Martel.Expression.Seq instance at 0x596e0e0>
  MedlineJournalInfo = <Martel.Expression.Group instance at 0x59...
  MedlineJournalInfo_end = <Martel.Expression.Seq instance at 0x...
  MedlineJournalInfo_start = <Martel.Expression.Seq instance at ...
  MedlinePgn = <Martel.Expression.Seq instance at 0x5965290>
  MedlineTA = <Martel.Expression.Seq instance at 0x59686c8>
  MeshHeading = <Martel.Expression.Group instance at 0x5964cb0>
  MeshHeadingList = <Martel.Expression.Group instance at 0x5964f38>
  MeshHeadingList_end = <Martel.Expression.Seq instance at 0x596...
  MeshHeadingList_start = <Martel.Expression.Seq instance at 0x5...
  MeshHeading_end = <Martel.Expression.Seq instance at 0x5964c68>
  MeshHeading_start = <Martel.Expression.Seq instance at 0x5964b90>
  MiddleName = <Martel.Expression.Seq instance at 0x595ef38>
  Minute = <Martel.Expression.Seq instance at 0x5961d88>
  Month = <Martel.Expression.Seq instance at 0x5961248>
  NCBIArticle = <Martel.Expression.Group instance at 0x596ddd0>
  NCBIArticle_end = <Martel.Expression.Seq instance at 0x596dd88>
  NCBIArticle_start = <Martel.Expression.Seq instance at 0x596dcb0>
  NameOfSubstance = <Martel.Expression.Seq instance at 0x5972b00>
  NlmUniqueID = <Martel.Expression.Seq instance at 0x5962cf8>
  Note = <Martel.Expression.Seq instance at 0x596e320>
  NumberOfReferences = <Martel.Expression.Seq instance at 0x5971...
  OriginalReportIn = <Martel.Expression.Group instance at 0x596e...
  OriginalReportIn_end = <Martel.Expression.Seq instance at 0x59...
  OriginalReportIn_start = <Martel.Expression.Seq instance at 0x...
  OtherAbstract = <Martel.Expression.Group instance at 0x5976e60>
  OtherAbstract_end = <Martel.Expression.Seq instance at 0x5976e18>
  OtherAbstract_start = <Martel.Expression.Seq instance at 0x597...
  OtherID = <Martel.Expression.Seq instance at 0x5975830>
  PMID = <Martel.Expression.Seq instance at 0x5962f38>
  Pagination = <Martel.Expression.Group instance at 0x59659e0>
  Pagination_end = <Martel.Expression.Seq instance at 0x5965998>
  Pagination_start = <Martel.Expression.Seq instance at 0x59658c0>
  PersonalNameSubject = <Martel.Expression.Group instance at 0x5...
  PersonalNameSubjectList = <Martel.Expression.Group instance at...
  PersonalNameSubjectList_end = <Martel.Expression.Seq instance ...
  PersonalNameSubjectList_start = <Martel.Expression.Seq instanc...
  PersonalNameSubject_end = <Martel.Expression.Seq instance at 0...
  PersonalNameSubject_start = <Martel.Expression.Seq instance at...
  PubDate = <Martel.Expression.Group instance at 0x5967dd0>
  PubDate_end = <Martel.Expression.Seq instance at 0x5967d88>
  PubDate_start = <Martel.Expression.Seq instance at 0x5967cb0>
  PubMedPubDate = <Martel.Expression.Group instance at 0x597a440>
  PubMedPubDate_end = <Martel.Expression.Seq instance at 0x597a3f8>
  PubMedPubDate_start = <Martel.Expression.Seq instance at 0x597...
  PublicationStatus = <Martel.Expression.Seq instance at 0x597aa28>
  PublicationType = <Martel.Expression.Seq instance at 0x5966b90>
  PublicationTypeList = <Martel.Expression.Group instance at 0x5...
  PublicationTypeList_end = <Martel.Expression.Seq instance at 0...
  PublicationTypeList_start = <Martel.Expression.Seq instance at...
  Publisher = <Martel.Expression.Seq instance at 0x5967c20>
  PubmedArticle = <Martel.Expression.Group instance at 0x597c878>
  PubmedArticleSet = <Martel.Expression.Group instance at 0x597c...
  PubmedArticleSet_end = <Martel.Expression.Seq instance at 0x59...
  PubmedArticleSet_start = <Martel.Expression.Seq instance at 0x...
  PubmedArticle_end = <Martel.Expression.Seq instance at 0x597c830>
  PubmedArticle_start = <Martel.Expression.Seq instance at 0x597...
  PubmedData = <Martel.Expression.Group instance at 0x597c5f0>
  PubmedData_end = <Martel.Expression.Seq instance at 0x597c5a8>
  PubmedData_start = <Martel.Expression.Seq instance at 0x597c4d0>
  QualifierName = <Martel.Expression.Seq instance at 0x5963cb0>
  RefSource = <Martel.Expression.Seq instance at 0x596e560>
  RegistryNumber = <Martel.Expression.Seq instance at 0x5972d40>
  RepublishedFrom = <Martel.Expression.Group instance at 0x59707a0>
  RepublishedFrom_end = <Martel.Expression.Seq instance at 0x597...
  RepublishedFrom_start = <Martel.Expression.Seq instance at 0x5...
  RepublishedIn = <Martel.Expression.Group instance at 0x5970a28>
  RepublishedIn_end = <Martel.Expression.Seq instance at 0x59709e0>
  RepublishedIn_start = <Martel.Expression.Seq instance at 0x597...
  RetractionIn = <Martel.Expression.Group instance at 0x5970f38>
  RetractionIn_end = <Martel.Expression.Seq instance at 0x5970ef0>
  RetractionIn_start = <Martel.Expression.Seq instance at 0x5970...
  RetractionOf = <Martel.Expression.Group instance at 0x5970cb0>
  RetractionOf_end = <Martel.Expression.Seq instance at 0x5970c68>
  RetractionOf_start = <Martel.Expression.Seq instance at 0x5970...
  Season = <Martel.Expression.Seq instance at 0x59616c8>
  Second = <Martel.Expression.Seq instance at 0x5961fc8>
  SpaceFlightMission = <Martel.Expression.Seq instance at 0x5975...
  StartPage = <Martel.Expression.Seq instance at 0x5965710>
  SubHeading = <Martel.Expression.Seq instance at 0x5963638>
  Suffix = <Martel.Expression.Seq instance at 0x595f638>
  SummaryForPatientsIn = <Martel.Expression.Group instance at 0x...
  SummaryForPatientsIn_end = <Martel.Expression.Seq instance at ...
  SummaryForPatientsIn_start = <Martel.Expression.Seq instance a...
  Title = <Martel.Expression.Seq instance at 0x59670e0>
  UpdateIn = <Martel.Expression.Group instance at 0x5971200>
  UpdateIn_end = <Martel.Expression.Seq instance at 0x59711b8>
  UpdateIn_start = <Martel.Expression.Seq instance at 0x59710e0>
  UpdateOf = <Martel.Expression.Group instance at 0x5971488>
  UpdateOf_end = <Martel.Expression.Seq instance at 0x5971440>
  UpdateOf_start = <Martel.Expression.Seq instance at 0x5971368>
  VernacularTitle = <Martel.Expression.Seq instance at 0x5967560>
  Volume = <Martel.Expression.Seq instance at 0x5967320>
  Year = <Martel.Expression.Seq instance at 0x595ffc8>
  __warningregistry__ = {('Bio.Medline.NLMMedlineXML was depreca...
  e = 'Second'
Function Details [hide private]

simple_elem(element, *attrs)

source code 

Create a Martel Expression in this module's namespace that will recognize an XML element in the form of: <element>data</element>

The whole element must be on a single line. The Expression will be created in the module's namespace with the same name as the element.


Variables Details [hide private]

personal_name

Value:
LastName+ Opt(Alt(ForeName, FirstName+ Opt(MiddleName)))+ Opt(Initials\
)+ Opt(Suffix)

indexing_status

Value:
Alt(Str("Ceased-publication"), Str("Continued-by-another-indexed-title\
"), Str("Currently-indexed"), Str("Currently-indexed-Title-changed"), \
Str("Date-range-of-indexed-citations-unspecified"), Str("Deselected"))

elements

Value:
['Year',
 'Month',
 'Day',
 'Season',
 'MedlineDate',
 'Hour',
 'Minute',
 'Second']

normal_date

Value:
Year+ Month+ Day+ Opt(Hour+ Opt(Minute+ Opt(Second)))

pub_date

Value:
Alt((Year+ Opt(Alt((Month+ Opt(Day)), Season))), MedlineDate)

DeleteCitation_start

Value:
Rep(space)+ Str("<DeleteCitation>")+ AnyEol()

DeleteCitation_end

Value:
Rep(space)+ Str("</DeleteCitation>")+ AnyEol()

MedlineCitationSet_end

Value:
Str("</MedlineCitationSet>")+ Opt(AnyEol())

doctype

Value:
Str('<!DOCTYPE PubmedArticleSet PUBLIC "-//NLM//DTD PubMedArticle, 1st\
 November 2003//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/pubm\
ed_031101.dtd">')+ AnyEol()

header_format

Value:
Group("header", DOCTYPE+ MedlineCitationSet_start)

format

Value:
HeaderFooter("MedlineFile", {}, header_format, RecordReader.CountLines\
, (4,), citation_format, RecordReader.EndsWith, ("</MedlineCitation>",\
), footer_format, RecordReader.Everything, (),)

AccessionNumberList

Value:
<Martel.Expression.Group instance at 0x596c998>

AccessionNumberList_end

Value:
<Martel.Expression.Seq instance at 0x596c950>

AccessionNumberList_start

Value:
<Martel.Expression.Seq instance at 0x596c878>

ArticleIdList_start

Value:
<Martel.Expression.Seq instance at 0x597c248>

ChemicalList_start

Value:
<Martel.Expression.Seq instance at 0x59740e0>

CommentsCorrections

Value:
<Martel.Expression.Group instance at 0x5971b00>

CommentsCorrections_end

Value:
<Martel.Expression.Seq instance at 0x5971ab8>

CommentsCorrections_start

Value:
<Martel.Expression.Seq instance at 0x59719e0>

CopyrightInformation

Value:
<Martel.Expression.Seq instance at 0x59625a8>

DataBankList_start

Value:
<Martel.Expression.Seq instance at 0x596d4d0>

DateCompleted_start

Value:
<Martel.Expression.Seq instance at 0x5979248>

DateOfElectronicPublication

Value:
<Martel.Expression.Seq instance at 0x5968f38>

GeneSymbolList_end

Value:
<Martel.Expression.Seq instance at 0x59727a0>

GeneSymbolList_start

Value:
<Martel.Expression.Seq instance at 0x59726c8>

InvestigatorList

Value:
<Martel.Expression.Group instance at 0x5975098>

InvestigatorList_end

Value:
<Martel.Expression.Seq instance at 0x5975050>

InvestigatorList_start

Value:
<Martel.Expression.Seq instance at 0x5974f38>

Investigator_start

Value:
<Martel.Expression.Seq instance at 0x5974cb0>

JournalIssue_start

Value:
<Martel.Expression.Seq instance at 0x5969c20>

MedlineCitationSet

Value:
<Martel.Expression.Group instance at 0x5978c20>

MedlineCitationSet_start

Value:
<Martel.Expression.Seq instance at 0x5978bd8>

MedlineCitation_end

Value:
<Martel.Expression.Seq instance at 0x5978440>

MedlineCitation_start

Value:
<Martel.Expression.Seq instance at 0x59783b0>

MedlineJournalInfo

Value:
<Martel.Expression.Group instance at 0x5968bd8>

MedlineJournalInfo_end

Value:
<Martel.Expression.Seq instance at 0x5968b90>

MedlineJournalInfo_start

Value:
<Martel.Expression.Seq instance at 0x5968ab8>

MeshHeadingList_end

Value:
<Martel.Expression.Seq instance at 0x5964ef0>

MeshHeadingList_start

Value:
<Martel.Expression.Seq instance at 0x5964e18>

NumberOfReferences

Value:
<Martel.Expression.Seq instance at 0x5971d88>

OriginalReportIn

Value:
<Martel.Expression.Group instance at 0x596e830>

OriginalReportIn_end

Value:
<Martel.Expression.Seq instance at 0x596e7e8>

OriginalReportIn_start

Value:
<Martel.Expression.Seq instance at 0x596e710>

OtherAbstract_start

Value:
<Martel.Expression.Seq instance at 0x5976d88>

PersonalNameSubject

Value:
<Martel.Expression.Group instance at 0x5971f80>

PersonalNameSubjectList

Value:
<Martel.Expression.Group instance at 0x5972368>

PersonalNameSubjectList_end

Value:
<Martel.Expression.Seq instance at 0x5972320>

PersonalNameSubjectList_start

Value:
<Martel.Expression.Seq instance at 0x5972200>

PersonalNameSubject_end

Value:
<Martel.Expression.Seq instance at 0x5971f38>

PersonalNameSubject_start

Value:
<Martel.Expression.Seq instance at 0x5971e60>

PubMedPubDate_start

Value:
<Martel.Expression.Seq instance at 0x597a368>

PublicationTypeList

Value:
<Martel.Expression.Group instance at 0x5966dd0>

PublicationTypeList_end

Value:
<Martel.Expression.Seq instance at 0x5966d88>

PublicationTypeList_start

Value:
<Martel.Expression.Seq instance at 0x5966cb0>

PubmedArticleSet

Value:
<Martel.Expression.Group instance at 0x597cbd8>

PubmedArticleSet_end

Value:
<Martel.Expression.Seq instance at 0x597cb90>

PubmedArticleSet_start

Value:
<Martel.Expression.Seq instance at 0x597cab8>

PubmedArticle_start

Value:
<Martel.Expression.Seq instance at 0x597c758>

RepublishedFrom_end

Value:
<Martel.Expression.Seq instance at 0x5970758>

RepublishedFrom_start

Value:
<Martel.Expression.Seq instance at 0x5970680>

RepublishedIn_start

Value:
<Martel.Expression.Seq instance at 0x5970908>

RetractionIn_start

Value:
<Martel.Expression.Seq instance at 0x5970e18>

RetractionOf_start

Value:
<Martel.Expression.Seq instance at 0x5970b90>

SpaceFlightMission

Value:
<Martel.Expression.Seq instance at 0x5975a28>

SummaryForPatientsIn

Value:
<Martel.Expression.Group instance at 0x596eb00>

SummaryForPatientsIn_end

Value:
<Martel.Expression.Seq instance at 0x596eab8>

SummaryForPatientsIn_start

Value:
<Martel.Expression.Seq instance at 0x596e9e0>

__warningregistry__

Value:
{('Bio.Medline.NLMMedlineXML was deprecated, as it does not seem to be\
 able to parse recent Medline XML files. If you want to continue to us\
e this module, please get in contact with the Biopython developers at \
biopython-dev@biopython.org to avoid permanent removal of this module \
from Biopython',
  <type 'exceptions.DeprecationWarning'>,
  16): 1}