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A Martel format to parse the output from transfac.
Formats: format Format for a whole file.
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blank_line = Opt(Spaces())+ AnyEol()
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MATRIX_LINE = Str("Search for sites by WeightMatrix library:")
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SEQUENCE_LINE = Str("Sequence file:")+ Spaces()+ UntilEol("seq
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PROFILE_LINE = Str("Site selection profile:")+ Spaces()+ Until
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TITLE_LINE = Str("Inspecting sequence ID")+ Spaces()+ UntilSep
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DATA_LINE = SS(UntilSep("matrix_identifier", sep= " |"))+ Str(
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SEQUENCES_LENGTH_LINE = Spaces()+ Str("Total sequences length=
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FOUND_SITES_LINE = Spaces()+ Str("Total number of found sites=
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SITE_FREQUENCY_LINE = Spaces()+ Str("Frequency of sites per nu
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format = MATRIX_LINE+ SEQUENCE_LINE+ PROFILE_LINE+ blank_line+
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__warningregistry__ =
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MATRIX_LINE
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SEQUENCE_LINE
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PROFILE_LINE
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TITLE_LINE
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DATA_LINE
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SEQUENCES_LENGTH_LINE
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FOUND_SITES_LINE
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SITE_FREQUENCY_LINE
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format
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__warningregistry__
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