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Identifier Index
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]
B
back_table
(in
CodonTable
)
bitwise_or
(in
Bio.NaiveBayes
)
blastx_ending
(in
Bio.expressions.blast.wublast
)
back_transcribe()
(in
Bio.Seq
)
bitwise_or
(in
Bio.Statistics.lowess
)
blastx_hsp_header
(in
Bio.expressions.blast.ncbiblast
)
back_transcribe()
(in
Transcribe
)
bitwise_or
(in
Bio.distance
)
blastx_hsp_header
(in
Bio.expressions.blast.wublast
)
back_transcribe()
(in
Bio.utils
)
bitwise_or
(in
Bio.kNN
)
blastx_identities
(in
Bio.expressions.blast.wublast
)
back_translate()
(in
Translator
)
bitwise_xor
(in
Bio.Affy.CelFile
)
blastx_score
(in
Bio.expressions.blast.wublast
)
back_translate()
(in
Bio.utils
)
bitwise_xor
(in
Bio.LogisticRegression
)
blastx_strand
(in
Bio.expressions.blast.wublast
)
backpropagate()
(in
HiddenLayer
)
bitwise_xor
(in
Bio.MarkovModel
)
blastx_table_entry
(in
Bio.expressions.blast.wublast
)
backpropagate()
(in
InputLayer
)
bitwise_xor
(in
Bio.MaxEntropy
)
blastx_to_database
(in
Bio.expressions.blast.wublast
)
backpropagate()
(in
OutputLayer
)
bitwise_xor
(in
Bio.NaiveBayes
)
Block
(in
Bio.Nexus.Nexus
)
BackPropagation
(in
Bio.NeuralNetwork
)
bitwise_xor
(in
Bio.Statistics.lowess
)
block_info
(in
Bio.Clustalw.clustal_format
)
backward_algorithm()
(in
AbstractDPAlgorithms
)
bitwise_xor
(in
Bio.distance
)
block_type
(in
Bio.ECell.ecell_format
)
BadMatrix
(in
Bio.SubsMat
)
bitwise_xor
(in
Bio.kNN
)
blocks
(in
Bio.expressions
)
BadMatrixError
(in
Bio.SubsMat
)
BL
(in
Bio.expressions.blocks
)
blosum100
(in
Bio.SubsMat.MatrixInfo
)
BANGLINE
(in
Bio.EUtils.sourcegen
)
blank
(in
Bio.MetaTool.metatool_format
)
blosum30
(in
Bio.SubsMat.MatrixInfo
)
BarChartDistribution
(in
Bio.Graphics.Distribution
)
blank_expr
(in
Bio.dbdefs._support
)
blosum35
(in
Bio.SubsMat.MatrixInfo
)
Base
(in
Bio.EUtils.DTDs.LinkOut
)
blank_expr
(in
Bio.dbdefs.embl
)
blosum40
(in
Bio.SubsMat.MatrixInfo
)
base_count
(in
Bio.expressions.genbank
)
blank_expr
(in
Bio.dbdefs.fasta
)
blosum45
(in
Bio.SubsMat.MatrixInfo
)
base_count()
(in
_FeatureConsumer
)
blank_expr
(in
Bio.dbdefs.genbank
)
blosum50
(in
Bio.SubsMat.MatrixInfo
)
base_count()
(in
_RecordConsumer
)
blank_expr
(in
Bio.dbdefs.interpro
)
blosum55
(in
Bio.SubsMat.MatrixInfo
)
base_count_line
(in
Bio.expressions.genbank
)
blank_expr
(in
Bio.dbdefs.medline
)
blosum60
(in
Bio.SubsMat.MatrixInfo
)
BASE_FEATURE_FORMAT
(in
Record
)
blank_expr
(in
Bio.dbdefs.pdb
)
blosum62
(in
Bio.SubsMat.MatrixInfo
)
BASE_FORMAT
(in
Record
)
blank_expr
(in
Bio.dbdefs.prosite
)
blosum65
(in
Bio.SubsMat.MatrixInfo
)
base_number
(in
Bio.expressions.genbank
)
blank_expr
(in
Bio.dbdefs.swissprot
)
blosum70
(in
Bio.SubsMat.MatrixInfo
)
base_number()
(in
_FeatureConsumer
)
blank_line
(in
Bio.Emboss.primer3_format
)
blosum75
(in
Bio.SubsMat.MatrixInfo
)
base_str()
(in
PrositeTerm
)
blank_line
(in
Bio.Emboss.primersearch_format
)
blosum80
(in
Bio.SubsMat.MatrixInfo
)
BaseDB
(in
Bio.Mindy
)
blank_line
(in
Bio.MetaTool.metatool_format
)
blosum85
(in
Bio.SubsMat.MatrixInfo
)
BaseDBIdsRecordSet
(in
Bio.EUtils.DBIdsClient
)
blank_line
(in
Bio.expressions.transfac
)
blosum90
(in
Bio.SubsMat.MatrixInfo
)
BaseExpand()
(in
Bio.Restriction._Update.RestrictionCompiler
)
blank_space
(in
Bio.MetaTool.metatool_format
)
blosum95
(in
Bio.SubsMat.MatrixInfo
)
BaseFlatDB
(in
Bio.Mindy.FlatDB
)
blank_space
(in
Bio.expressions.genbank
)
Blunt
(in
Bio.Restriction.Restriction
)
BaseHistoryRecordSet
(in
Bio.EUtils.HistoryClient
)
blank_spaces
(in
Bio.LocusLink.locus_format
)
blunt()
(in
Analysis
)
BaseSeqRecordIndexer
(in
Bio.Mindy.SimpleSeqRecord
)
Blast
(in
Bio
)
bogus_DR_group
(in
Bio.expressions.swissprot.sprot38
)
BasicChromosome
(in
Bio.Graphics
)
Blast
(in
Bio.Blast.Record
)
bogus_DR_group
(in
Martel.test.test_swissprot38
)
BasicNetwork
(in
Bio.NeuralNetwork.BackPropagation.Network
)
blast
(in
Bio.expressions
)
bogus_DR_group
(in
Martel.test.testformats.swissprot38
)
BaumWelchTrainer
(in
Bio.HMM.Trainer
)
blast
(in
Bio.formatdefs.search
)
boiler_plate
(in
Bio.CDD.cdd_format
)
BeforePosition
(in
Bio.SeqFeature
)
blast_cutoff()
(in
_ParametersConsumer
)
Bol()
(in
Martel
)
begin_contig()
(in
_RecordConsumer
)
blast_filter
(in
Bio.expressions.blast.ncbiblast
)
Book
(in
Bio.Medline.nlmmedline_001211_format
)
begin_record_line
(in
Bio.LocusLink.locus_format
)
blastall()
(in
Bio.Blast.NCBIStandalone
)
Book
(in
Bio.Medline.nlmmedline_010319_format
)
begin_sequence()
(in
_RecordConsumer
)
BlastallCommandline
(in
Bio.Blast.Applications
)
Book
(in
Bio.Medline.nlmmedline_011101_format
)
benner22
(in
Bio.SubsMat.MatrixInfo
)
BlastErrorParser
(in
Bio.Blast.NCBIStandalone
)
Book
(in
Bio.Medline.nlmmedline_031101_format
)
benner6
(in
Bio.SubsMat.MatrixInfo
)
blastn
(in
Bio.expressions.blast.ncbiblast
)
Book_end
(in
Bio.Medline.nlmmedline_001211_format
)
benner74
(in
Bio.SubsMat.MatrixInfo
)
blastn
(in
Bio.expressions.blast.wublast
)
Book_end
(in
Bio.Medline.nlmmedline_010319_format
)
BerkeleyDB
(in
Bio.Mindy
)
blastn
(in
Bio.formatdefs.search
)
Book_end
(in
Bio.Medline.nlmmedline_011101_format
)
BerkeleyDB
(in
Bio.Mindy.BerkeleyDB
)
blastn_appheader
(in
Bio.expressions.blast.ncbiblast
)
Book_end
(in
Bio.Medline.nlmmedline_031101_format
)
Between
(in
Bio.GenBank.LocationParser
)
blastn_appheader
(in
Bio.expressions.blast.wublast
)
Book_start
(in
Bio.Medline.nlmmedline_001211_format
)
between()
(in
Analysis
)
blastn_ending
(in
Bio.expressions.blast.ncbiblast
)
Book_start
(in
Bio.Medline.nlmmedline_010319_format
)
BetweenPosition
(in
Bio.SeqFeature
)
blastn_ending
(in
Bio.expressions.blast.wublast
)
Book_start
(in
Bio.Medline.nlmmedline_011101_format
)
bf_search()
(in
Bio.Pathway.Rep.MultiGraph
)
blastn_hsp_header
(in
Bio.expressions.blast.ncbiblast
)
Book_start
(in
Bio.Medline.nlmmedline_031101_format
)
bib
(in
Bio.expressions.swissprot.sprot40
)
blastn_hsp_header
(in
Bio.expressions.blast.wublast
)
bootstrap()
(in
Nexus
)
biblio
(in
Bio
)
blastn_identical
(in
Bio.expressions.blast.ncbiblast
)
bounding()
(in
Location
)
Biblio
(in
Bio.biblio
)
blastn_identities
(in
Bio.expressions.blast.wublast
)
bq_data()
(in
_RecordConsumer
)
BiblioCollection
(in
Bio.biblio
)
blastn_score
(in
Bio.expressions.blast.wublast
)
bq_header()
(in
_RecordConsumer
)
big_gap
(in
Bio.MetaTool.metatool_format
)
blastn_strand
(in
Bio.expressions.blast.wublast
)
BRANCH
(in
Martel.msre_constants
)
big_indent_space
(in
Bio.expressions.genbank
)
blastp
(in
Bio.expressions.blast.ncbiblast
)
BRANCH
(in
Martel.msre_parse
)
BinaryOp
(in
Bio.EUtils.Datatypes
)
blastp
(in
Bio.expressions.blast.wublast
)
branch_metabolite
(in
Bio.MetaTool.metatool_format
)
binning
(in
Bio.GFF
)
blastp
(in
Bio.formatdefs.search
)
branch_metabolite()
(in
_RecordConsumer
)
Bio
blastp_appheader
(in
Bio.expressions.blast.ncbiblast
)
branch_metabolite_block
(in
Bio.MetaTool.metatool_format
)
BioCorbaDB
(in
Bio.config.DBRegistry
)
blastp_appheader
(in
Bio.expressions.blast.wublast
)
branchlength2support()
(in
Tree
)
BioformatDBName
(in
Bio.DBXRef
)
blastp_ending
(in
Bio.expressions.blast.ncbiblast
)
Brief
(in
Bio.EUtils.DTDs.LinkOut
)
BioSeq
(in
BioSQL
)
blastp_ending
(in
Bio.expressions.blast.wublast
)
bs
(in
Bio.Sequencing.Ace
)
BioSeqDatabase
(in
BioSQL
)
blastp_hsp_header
(in
Bio.expressions.blast.ncbiblast
)
bs()
(in
_RecordConsumer
)
BioSeqDatabase
(in
BioSQL.BioSeqDatabase
)
blastp_hsp_header
(in
Bio.expressions.blast.wublast
)
buffers()
(in
Commercially_available
)
BioSQL
blastp_identical
(in
Bio.expressions.blast.ncbiblast
)
buffers()
(in
Not_available
)
BioSQLDB
(in
Bio.config.DBRegistry
)
blastp_score
(in
Bio.expressions.blast.wublast
)
build_align()
(in
Immune
)
BisectFile
(in
Bio.Mindy.FlatDB
)
BlastParser
(in
Bio.Blast.NCBIStandalone
)
build_dict()
(in
DictionaryBuilder
)
bitwise_and
(in
Bio.Affy.CelFile
)
BlastParser
(in
Bio.Blast.NCBIWWW
)
build_peptides()
(in
_PPBuilder
)
bitwise_and
(in
Bio.LogisticRegression
)
BlastParser
(in
Bio.Blast.NCBIXML
)
build_resnum_list()
(in
FSSPAlignDict
)
bitwise_and
(in
Bio.MarkovModel
)
blastpgp()
(in
Bio.Blast.NCBIStandalone
)
buildASTNode()
(in
GenericASTBuilder
)
bitwise_and
(in
Bio.MaxEntropy
)
BlastTableEntry
(in
Bio.Blast.ParseBlastTable
)
builders
(in
Bio
)
bitwise_and
(in
Bio.NaiveBayes
)
BlastTableReader
(in
Bio.Blast.ParseBlastTable
)
BuildSearch
(in
Bio.builders.Search.search
)
bitwise_and
(in
Bio.Statistics.lowess
)
BlastTableRec
(in
Bio.Blast.ParseBlastTable
)
BuildSeqRecord
(in
Bio.builders.SeqRecord.sequence
)
bitwise_and
(in
Bio.distance
)
blastx
(in
Bio.expressions.blast.ncbiblast
)
buildState()
(in
GenericParser
)
bitwise_and
(in
Bio.kNN
)
blastx
(in
Bio.expressions.blast.wublast
)
buildTree()
(in
GenericParser
)
bitwise_or
(in
Bio.Affy.CelFile
)
blastx
(in
Bio.formatdefs.search
)
buildTree_r()
(in
GenericParser
)
bitwise_or
(in
Bio.LogisticRegression
)
blastx_appheader
(in
Bio.expressions.blast.ncbiblast
)
buildtype()
(in
TypeCompiler
)
bitwise_or
(in
Bio.MarkovModel
)
blastx_appheader
(in
Bio.expressions.blast.wublast
)
byte_concat()
(in
Bio.HotRand
)
bitwise_or
(in
Bio.MaxEntropy
)
blastx_ending
(in
Bio.expressions.blast.ncbiblast
)
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