Package Bio :: Package dbdefs :: Module embl
[hide private]
[frames] | no frames]

Module embl

source code

Variables [hide private]
  embl_xembl_cgi = CGIDB(name= "embl-xembl-cgi", doc= "Query XEM...
  embl_dbfetch_cgi = CGIDB(name= "embl-dbfetch-cgi", cgi= "http:...
  embl_ebi_cgi = CGIDB(name= "embl-ebi-cgi", cgi= "http://www.eb...
  embl = DBGroup(name= "embl", behavior= "serial",)
  embl_xml = DBGroup(name= "embl-xml", behavior= "serial")
  embl_fast = DBGroup(name= "embl-fast", behavior= "concurrent",)
  blank_expr = _M.AssertNot(_M.Re("."))
  html_expr = _M.Rep(_M.Any(_string.whitespace))+ _M.NoCase(_M.S...
Variables Details [hide private]

embl_xembl_cgi

Value:
CGIDB(name= "embl-xembl-cgi", doc= "Query XEMBL for EMBL sequence data\
 in XML format.", cgi= "http://www.ebi.ac.uk/cgi-bin/xembl/XEMBL.pl", \
url= "http://www.ebi.ac.uk/xembl/", delay= 5.0, params= [("format", "B\
sml")], key= "id", failure_cases= [(has_str("NOT EXIST"), "id does not\
 exist")],)

embl_dbfetch_cgi

Value:
CGIDB(name= "embl-dbfetch-cgi", cgi= "http://www.ebi.ac.uk/cgi-bin/dbf\
etch", url= "http://www.ebi.ac.uk/cgi-bin/dbfetch", doc= "dbfetch prov\
ides EMBL, Genbank, and SWALL sequences", delay= 5.0, params= [("db", \
"embl"), ("style", "raw"), ("format", "embl"),], key= "id", failure_ca\
ses= [(has_str("not found in database"), "id does not exist")])

embl_ebi_cgi

Value:
CGIDB(name= "embl-ebi-cgi", cgi= "http://www.ebi.ac.uk/cgi-bin/emblfet\
ch", url= "http://www.ebi.ac.uk/cgi-bin/emblfetch", doc= "Retrieve man\
y kinds of sequences from EBI", delay= 5.0, params= [("db", "EMBL"), (\
"format", "default"), ("style", "raw")], key= "id", failure_cases= [(b\
lank_expr, "No results returned")])

html_expr

Value:
_M.Rep(_M.Any(_string.whitespace))+ _M.NoCase(_M.Str("<html>"))