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Local Composition Complexity (LCC) values over sliding window. Returns a list of floats, the LCC values for a sliding window over the sequence. seq - an unambiguous DNA sequence (a string or Seq object) wsize - window size, integer The result is the same as applying lcc_simp multiple times, but this version is optimized for speed. The optimization works by using the value of previous window as a base to compute the next one. |
Local Composition Complexity (LCC) for a sequence. seq - an unambiguous DNA sequence (a string or Seq object) Returns the Local Composition Complexity (LCC) value for the entire sequence (as a float). Reference: Andrzej K Konopka (2005) Sequence Complexity and Composition DOI: 10.1038/npg.els.0005260 |
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