1 from Bio.config.FormatRegistry import FormatObject, FormatGroup
2
3 search = FormatGroup(
4 name = "search",
5 multirecord = 0,
6 )
7
8 blast = FormatGroup(
9 name = "blast",
10 filter = "Bio.expressions.blast.ncbiblast.blast_filter",
11 multirecord = 0,
12 )
13 search.add(blast)
14
15 blastp = FormatGroup(
16 name = "blastp",
17 multirecord = 0,
18 )
19 blast.add(blastp)
20
21 blastn = FormatGroup(
22 name = "blastn",
23 multirecord = 0,
24 )
25 blast.add(blastn)
26
27 blastx = FormatGroup(
28 name = "blastx",
29 multirecord = 0,
30 )
31 blast.add(blastx)
32
33 tblastn = FormatGroup(
34 name = "tblastn",
35 multirecord = 0,
36 )
37 blast.add(tblastn)
38
39 tblastx = FormatGroup(
40 name = "tblastx",
41 multirecord = 0,
42 )
43 blast.add(tblastx)
44
45
46 ncbi_blastp = FormatObject(
47 name = "ncbi-blastp",
48 abbrev = "ncbi_blastp",
49 expression = "Bio.expressions.blast.ncbiblast.blastp",
50 filter = "Bio.expressions.blast.ncbiblast.blastp_appheader",
51 multirecord = 0,
52 )
53 blastp.add(ncbi_blastp)
54
55 ncbi_blastn = FormatObject(
56 name = "ncbi-blastn",
57 abbrev = "ncbi_blastn",
58 expression = "Bio.expressions.blast.ncbiblast.blastn",
59 filter = "Bio.expressions.blast.ncbiblast.blastn_appheader",
60 multirecord = 0,
61 )
62 blastn.add(ncbi_blastn)
63
64 ncbi_blastx = FormatObject(
65 name = "ncbi-blastx",
66 abbrev = "ncbi_blastx",
67 expression = "Bio.expressions.blast.ncbiblast.blastx",
68 filter = "Bio.expressions.blast.ncbiblast.blastx_appheader",
69 multirecord = 0,
70 )
71 blastx.add(ncbi_blastx)
72
73 ncbi_tblastn = FormatObject(
74 name = "ncbi-tblastn",
75 abbrev = "ncbi_tblastn",
76 expression = "Bio.expressions.blast.ncbiblast.tblastn",
77 filter = "Bio.expressions.blast.ncbiblast.tblastn_appheader",
78 multirecord = 0,
79 )
80 tblastn.add(ncbi_tblastn)
81
82 ncbi_tblastx = FormatObject(
83 name = "ncbi-tblastx",
84 abbrev = "ncbi_tblastx",
85 expression = "Bio.expressions.blast.ncbiblast.tblastx",
86 filter = "Bio.expressions.blast.ncbiblast.tblastx_appheader",
87 multirecord = 0,
88 )
89 tblastx.add(ncbi_tblastx)
90
91
92
93 wu_blastp = FormatObject(
94 name = "wu-blastp",
95 abbrev = "wu_blastp",
96 expression = "Bio.expressions.blast.wublast.blastp",
97 filter = "Bio.expressions.blast.wublast.blastp_appheader",
98 multirecord = 0,
99 )
100 blastp.add(wu_blastp)
101
102 wu_blastn = FormatObject(
103 name = "wu-blastn",
104 abbrev = "wu_blastn",
105 expression = "Bio.expressions.blast.wublast.blastn",
106 filter = "Bio.expressions.blast.wublast.blastn_appheader",
107 multirecord = 0,
108 )
109 blastn.add(wu_blastn)
110
111 wu_blastx = FormatObject(
112 name = "wu-blastx",
113 abbrev = "wu_blastx",
114 expression = "Bio.expressions.blast.wublast.blastx",
115 filter = "Bio.expressions.blast.wublast.blastx_appheader",
116 multirecord = 0,
117 )
118 blastx.add(wu_blastx)
119