Package Bio :: Module Seq :: Class Seq
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Class Seq

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Instance Methods [hide private]
 
__init__(self, data, alphabet=Alphabet()) source code
 
__repr__(self) source code
 
__str__(self) source code
 
__len__(self) source code
 
__getitem__(self, index) source code
 
__add__(self, other) source code
 
__radd__(self, other) source code
 
tostring(self) source code
 
tomutable(self) source code
 
count(self, item) source code
translation table
__maketrans(Seq, alphabet)
Return a translation table for use with complement() and reverse_complement().
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complement(self)
Returns the complement sequence.
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reverse_complement(self)
Returns the reverse complement sequence.
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Method Details [hide private]

__maketrans(Seq, alphabet)

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Return a translation table for use with complement() and reverse_complement().

Compatible with lower case and upper case sequences.

alphabet is a dictionary as implement in Data.IUPACData

For internal use only.

Returns: translation table

complement(self)

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Returns the complement sequence. New Seq object.

reverse_complement(self)

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Returns the reverse complement sequence. New Seq object.