Package Bio :: Package Blast
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Package Blast

source code

Code for dealing with BLAST programs and output.

Submodules [hide private]
  • Bio.Blast.Applications: Definitions for interacting with Blast related applications.
  • Bio.Blast.NCBIStandalone: This module provides code to work with the standalone version of BLAST, either blastall or blastpgp, provided by the NCBI.
  • Bio.Blast.NCBIWWW: This module provides code to work with the WWW version of BLAST provided by the NCBI.
  • Bio.Blast.NCBIXML: This module provides code to work with the BLAST XML output following the DTD available on the NCBI FTP ftp://ftp.ncbi.nlm.nih.gov/blast/documents/xml/NCBI_BlastOutput.dtd
  • Bio.Blast.ParseBlastTable
  • Bio.Blast.Record: Record classes to hold BLAST output.