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_
]
E
e
(in
Bio.Affy.CelFile
)
end_feature_block()
(in
Handle_features
)
Enzyme
(in
Bio.KEGG
)
e
(in
Bio.LogisticRegression
)
end_feature_description()
(in
Handle_features
)
enzyme
(in
Bio.MetaTool.metatool_format
)
e
(in
Bio.MarkovModel
)
end_feature_location()
(in
Handle_feature_location
)
enzyme()
(in
_RecordConsumer
)
e
(in
Bio.MaxEntropy
)
end_feature_location_end()
(in
Handle_feature_location
)
enzyme_num()
(in
_RecordConsumer
)
e
(in
Bio.NaiveBayes
)
end_feature_location_start()
(in
Handle_feature_location
)
enzymedict
(in
Bio.Restriction._Update.RestrictionCompiler
)
e
(in
Bio.Statistics.lowess
)
end_feature_name()
(in
Handle_features
)
EnzymeRecord
(in
Bio.Enzyme
)
e
(in
Bio.distance
)
end_feature_qualifier()
(in
Handle_feature_qualifier
)
enzymes_block
(in
Bio.MetaTool.metatool_format
)
e
(in
Bio.kNN
)
end_feature_qualifier_description()
(in
Handle_feature_qualifier
)
enzymes_header
(in
Bio.MetaTool.metatool_format
)
easy
(in
Bio.GFF
)
end_feature_qualifier_name()
(in
Handle_feature_qualifier
)
enzymes_list
(in
Bio.MetaTool.metatool_format
)
ECell
(in
Bio
)
end_h1()
(in
NdbParser
)
Eof()
(in
Martel
)
ecell_format
(in
Bio.ECell
)
end_h2()
(in
InterProParser
)
Eol()
(in
Martel
)
ecell_record
(in
Bio.ECell.ecell_format
)
end_h2()
(in
NdbParser
)
eols
(in
Bio.CDD.cdd_format
)
ECellError
(in
Bio.ECell
)
end_header()
(in
_BlastConsumer
)
epost()
(in
ThinClient
)
EConsenseCommandline
(in
Bio.Emboss.Applications
)
end_header()
(in
_HeaderConsumer
)
epost()
(in
Bio.Entrez
)
edges()
(in
Graph
)
end_header()
(in
_PSIBlastConsumer
)
epost()
(in
Bio.WWW.NCBI
)
edges()
(in
MultiGraph
)
end_hit()
(in
BuildSearch
)
ePost_020511
(in
Bio.EUtils.DTDs
)
efetch()
(in
PublicationDBIdsFetchMixin
)
end_hit_description()
(in
BuildSearch
)
ePostResult
(in
Bio.EUtils.DTDs.ePost_020511
)
efetch()
(in
SequenceDBIdsFetchMixin
)
end_hit_description_block()
(in
BuildSearch
)
EProtDistCommandline
(in
Bio.Emboss.Applications
)
efetch()
(in
PublicationHistoryFetchMixin
)
end_hit_length()
(in
BuildSearch
)
EProtParsCommandline
(in
Bio.Emboss.Applications
)
efetch()
(in
SequenceHistoryFetchMixin
)
end_hsp()
(in
_BlastConsumer
)
EPSILON
(in
Bio.SubsMat
)
efetch()
(in
Bio.Entrez
)
end_hsp()
(in
_HSPConsumer
)
equal
(in
Bio.Affy.CelFile
)
efetch()
(in
Bio.WWW.NCBI
)
end_hsp()
(in
_PSIBlastConsumer
)
equal
(in
Bio.LogisticRegression
)
efetch_using_dbids()
(in
ThinClient
)
end_hsp()
(in
Handle_hsp
)
equal
(in
Bio.MarkovModel
)
efetch_using_history()
(in
ThinClient
)
end_hsp()
(in
Handle_hsp_seqalign
)
equal
(in
Bio.MaxEntropy
)
effective_database_length()
(in
_ParametersConsumer
)
end_hsp_frame()
(in
Handle_hsp
)
equal
(in
Bio.NaiveBayes
)
effective_hsp_length()
(in
_ParametersConsumer
)
end_hsp_seqalign_homology_seq()
(in
Handle_hsp_seqalign
)
equal
(in
Bio.Statistics.lowess
)
effective_query_length()
(in
_ParametersConsumer
)
end_hsp_seqalign_query_end()
(in
Handle_hsp_seqalign
)
equal
(in
Bio.distance
)
effective_search_space()
(in
_ParametersConsumer
)
end_hsp_seqalign_query_leader()
(in
Handle_hsp_seqalign
)
equal
(in
Bio.kNN
)
effective_search_space_used()
(in
_ParametersConsumer
)
end_hsp_seqalign_query_name()
(in
Handle_hsp_seqalign
)
equal_weight()
(in
Bio.kNN
)
egquery()
(in
Bio.Entrez
)
end_hsp_seqalign_query_seq()
(in
Handle_hsp_seqalign
)
equischizomers()
(in
AbstractCut
)
einfo()
(in
Bio.Entrez
)
end_hsp_seqalign_query_start()
(in
Handle_hsp_seqalign
)
equiv_title
(in
Bio.FSSP
)
eInfo_020511
(in
Bio.EUtils.DTDs
)
end_hsp_seqalign_subject_end()
(in
Handle_hsp_seqalign
)
Error
(in
Bio.Crystal
)
eInfoResult
(in
Bio.EUtils.DTDs.eInfo_020511
)
end_hsp_seqalign_subject_name()
(in
Handle_hsp_seqalign
)
Error
(in
Bio.ECell
)
EInvertedCommandline
(in
Bio.Emboss.Applications
)
end_hsp_seqalign_subject_seq()
(in
Handle_hsp_seqalign
)
ERROR
(in
Bio.EUtils.DTDs.eInfo_020511
)
element()
(in
LAX
)
end_hsp_seqalign_subject_start()
(in
Handle_hsp_seqalign
)
ERROR
(in
Bio.EUtils.DTDs.eLink_020511
)
element()
(in
LAXAttrs
)
end_hsp_value()
(in
Handle_hsp
)
ERROR
(in
Bio.EUtils.DTDs.ePost_020511
)
element()
(in
LAXPositions
)
end_i()
(in
InterProParser
)
ERROR
(in
Bio.EUtils.DTDs.eSearch_020511
)
elementary_modes_block
(in
Bio.MetaTool.metatool_format
)
end_i()
(in
NdbParser
)
ERROR
(in
Bio.EUtils.DTDs.eSummary_020511
)
elementary_modes_line
(in
Bio.MetaTool.metatool_format
)
end_kernel
(in
Bio.MetaTool.metatool_format
)
ERROR
(in
Problem
)
elementary_modes_tag
(in
Bio.MetaTool.metatool_format
)
end_kernel()
(in
_RecordConsumer
)
error
(in
Martel.msre_constants
)
elementary_modes_tag()
(in
_RecordConsumer
)
end_li()
(in
InterProParser
)
error()
(in
GenericParser
)
elementDecl()
(in
DataHandler
)
end_li()
(in
NdbParser
)
error()
(in
GenericScanner
)
ElementInfo
(in
Martel.LAX
)
end_locus_line()
(in
_RecordConsumer
)
error()
(in
StoreEvents
)
ElementNode
end_not_balanced
(in
Bio.MetaTool.metatool_format
)
error()
(in
Dump
)
elements()
(in
RestrictionBatch
)
end_ol()
(in
InterProParser
)
error()
(in
CountErrors
)
elink()
(in
DBIdsLookup
)
end_parameters()
(in
_BlastConsumer
)
error()
(in
GetErrorPos
)
elink()
(in
HistoryLookup
)
end_parameters()
(in
_PSIBlastConsumer
)
error_expr
(in
Bio.dbdefs.fasta
)
elink()
(in
Bio.Entrez
)
end_parameters()
(in
_ParametersConsumer
)
error_expr
(in
Bio.dbdefs.genbank
)
elink()
(in
Bio.WWW.NCBI
)
end_phenotype_block()
(in
_RecordConsumer
)
error_expr
(in
Bio.dbdefs.medline
)
eLink_020511
(in
Bio.EUtils.DTDs
)
end_query_description()
(in
Handle_search_header
)
error_message
(in
Query
)
elink_using_dbids()
(in
ThinClient
)
end_query_description_block()
(in
Handle_search_header
)
ErrorList
(in
Bio.EUtils.DTDs.eSearch_020511
)
elink_using_history()
(in
ThinClient
)
end_query_size()
(in
Handle_search_header
)
ErrorProblem
(in
Bio.EUtils.Datatypes
)
eLinkResult
(in
Bio.EUtils.DTDs.eLink_020511
)
end_range_contents_multiline()
(in
_RecordConsumer
)
errors
(in
Bio.Entrez.SerialSet
)
elucidate()
(in
Ambiguous
)
end_range_tag()
(in
_RecordConsumer
)
escape()
(in
Martel.Dispatch
)
elucidate()
(in
Defined
)
end_record()
(in
_Primer3RecordConsumer
)
escape()
(in
Martel.Expression
)
elucidate()
(in
NotDefined
)
end_record()
(in
_PrimerSearchRecordConsumer
)
ESCAPES
(in
Martel.msre_parse
)
em
(in
Bio.SeqUtils.ProtParamData
)
end_record()
(in
_RecordConsumer
)
esearch()
(in
ThinClient
)
EMAIL
(in
Bio.EUtils.ThinClient
)
end_record()
(in
FixDocumentBuilder
)
esearch()
(in
Bio.Entrez
)
embl
(in
Bio.dbdefs
)
end_record()
(in
_RecordConsumer
)
esearch()
(in
Bio.WWW.NCBI
)
embl
(in
Bio.dbdefs.embl
)
end_record()
(in
_RecordConsumer
)
eSearch_020511
(in
Bio.EUtils.DTDs
)
embl
(in
Bio.expressions
)
end_record()
(in
_RecordConsumer
)
eSearchResult
(in
Bio.EUtils.DTDs.eSearch_020511
)
embl
(in
Bio.formatdefs
)
end_record()
(in
_RecordConsumer
)
ESeqBootCommandline
(in
Bio.Emboss.Applications
)
embl
(in
Bio.formatdefs.embl
)
end_record()
(in
_RecordConsumer
)
espell()
(in
Bio.Entrez
)
embl
(in
Bio.writers.SeqRecord
)
end_record()
(in
_SequenceConsumer
)
Est2GenomeCommandline
(in
Bio.Emboss.Applications
)
embl65
(in
Bio.expressions.embl
)
end_record()
(in
BuildSeqRecord
)
estimate_params()
(in
AbstractTrainer
)
embl65
(in
Bio.formatdefs.embl
)
end_reduced_system
(in
Bio.MetaTool.metatool_format
)
esummary()
(in
DBIdsLookup
)
embl_dbfetch_cgi
(in
Bio.dbdefs.embl
)
end_reduced_system()
(in
_RecordConsumer
)
esummary()
(in
HistoryLookup
)
embl_ebi_cgi
(in
Bio.dbdefs.embl
)
end_reference_contents_multiline()
(in
_RecordConsumer
)
esummary()
(in
Bio.Entrez
)
embl_fast
(in
Bio.dbdefs.embl
)
end_representative_contents_multiline()
(in
_RecordConsumer
)
eSummary_020511
(in
Bio.EUtils.DTDs
)
embl_xembl_cgi
(in
Bio.dbdefs.embl
)
end_representative_tag()
(in
_RecordConsumer
)
esummary_using_dbids()
(in
ThinClient
)
embl_xml
(in
Bio.dbdefs.embl
)
end_saf_record()
(in
_RecordConsumer
)
esummary_using_history()
(in
ThinClient
)
EmblCdsFeatureIterator()
(in
Bio.SeqIO.InsdcIO
)
end_search_header()
(in
Handle_search_header
)
eSummaryResult
(in
Bio.EUtils.DTDs.eSummary_020511
)
EmblIterator()
(in
Bio.SeqIO.InsdcIO
)
end_search_parameter()
(in
Handle_search_info
)
ETandemCommandline
(in
Bio.Emboss.Applications
)
EmblScanner
(in
Bio.GenBank.Scanner
)
end_search_statistic()
(in
Handle_search_info
)
euclidean()
(in
Bio.distance
)
Emboss
(in
Bio
)
end_search_table()
(in
Handle_search_table
)
euclidean_py()
(in
Bio.distance
)
EmbossIO
(in
Bio.AlignIO
)
end_search_table_description()
(in
Handle_search_table
)
EUtils
(in
Bio
)
EmbossIterator
(in
Bio.AlignIO.EmbossIO
)
end_search_table_entry()
(in
Handle_search_table
)
EUtilsDB
(in
Bio.config.DBRegistry
)
EmbossWriter
(in
Bio.AlignIO.EmbossIO
)
end_search_table_value()
(in
Handle_search_table
)
EUtilsError
(in
Bio.EUtils.Datatypes
)
EMPTY
(in
Bio.EUtils.POM
)
end_sequence()
(in
_RecordConsumer
)
EUtilsSearchError
(in
Bio.EUtils.Datatypes
)
empty
(in
Bio.formatdefs.sequence
)
end_sequence()
(in
_RecordConsumer
)
EventGenerator
(in
Bio.ParserSupport
)
empty
(in
Bio.writers.SeqRecord
)
end_sequence()
(in
_RecordConsumer
)
EventStream
(in
Martel.Iterator
)
empty()
(in
HashSet
)
end_sequence()
(in
Handle_sequence
)
Everything
(in
Martel.RecordReader
)
Empty()
(in
Martel
)
end_sequence_block()
(in
Handle_sequence
)
evolve()
(in
GenerationEvolver
)
encode_motif()
(in
Schema
)
end_sequence_contents_multiline()
(in
_RecordConsumer
)
Evolver
(in
Bio.GA
)
Encodings
(in
Bio
)
end_sequence_tag()
(in
_RecordConsumer
)
ExactPosition
(in
Bio.SeqFeature
)
end
(in
Bio.expressions.blocks
)
end_source_contents_multiline()
(in
_RecordConsumer
)
ExampleManager
(in
Bio.NeuralNetwork.Training
)
end
(in
Bio.expressions.embl.embl65
)
end_source_tag()
(in
_RecordConsumer
)
ExclQuery
(in
Bio.EUtils.DTDs.LinkOut
)
end
(in
Bio.expressions.swissprot.sprot38
)
end_status_contents_multiline()
(in
_RecordConsumer
)
excluded_chars
(in
Bio.ECell.ecell_format
)
end
(in
Martel.test.test_swissprot38
)
end_status_tag()
(in
_RecordConsumer
)
excluded_chars
(in
Bio.NBRF.nbrf_format
)
end
(in
Martel.test.testformats.swissprot38
)
end_stochiometric()
(in
_RecordConsumer
)
exec_template()
(in
Bio.PopGen.SimCoal.Template
)
end()
(in
Location
)
end_stoichiometric
(in
Bio.MetaTool.metatool_format
)
execute()
(in
Adaptor
)
end()
(in
PrositeMatch
)
end_sub()
(in
NdbParser
)
execute_and_fetch_col0()
(in
Adaptor
)
end()
(in
LAX
)
end_subsets
(in
Bio.MetaTool.metatool_format
)
execute_and_fetchall()
(in
Adaptor
)
end_()
(in
Handle_search_info
)
end_subsets()
(in
_RecordConsumer
)
execute_one()
(in
Adaptor
)
end_()
(in
BuildSearch
)
end_table()
(in
LocusLinkParser
)
exists()
(in
Biblio
)
end_a()
(in
InterProParser
)
end_table_entry()
(in
_RecordConsumer
)
exists()
(in
BiblioCollection
)
end_a()
(in
LocusLinkParser
)
end_taxonomy_contents_multiline()
(in
_RecordConsumer
)
exp
(in
Bio.Affy.CelFile
)
end_a()
(in
ExtractUrls
)
end_taxonomy_tag()
(in
_RecordConsumer
)
exp
(in
Bio.LogisticRegression
)
end_accnum_block()
(in
_RecordConsumer
)
end_td()
(in
InterProParser
)
exp
(in
Bio.MarkovModel
)
end_aligned_contents_multiline()
(in
_RecordConsumer
)
end_td()
(in
LocusLinkParser
)
exp
(in
Bio.MaxEntropy
)
end_aligned_tag()
(in
_RecordConsumer
)
end_th()
(in
LocusLinkParser
)
exp
(in
Bio.NaiveBayes
)
end_alignment()
(in
_AlignmentConsumer
)
end_tr()
(in
LocusLinkParser
)
exp
(in
Bio.Statistics.lowess
)
end_alignment()
(in
_BlastConsumer
)
end_ul()
(in
InterProParser
)
exp
(in
Bio.distance
)
end_alignment()
(in
_PSIBlastConsumer
)
end_ul()
(in
NdbParser
)
exp
(in
Bio.kNN
)
end_application_name()
(in
Handle_search_header
)
endDocument()
(in
ObjectParserHandler
)
expand_template()
(in
Martel.msre_parse
)
end_application_version()
(in
Handle_search_header
)
endDocument()
(in
EventGenerator
)
ExPASy
(in
Bio
)
end_b()
(in
LocusLinkParser
)
endDocument()
(in
Dispatcher
)
ExPASy
(in
Bio.WWW
)
end_candidate_line()
(in
_RecordConsumer
)
endDocument()
(in
StoreEvents
)
ExPASyDictionary
(in
Bio.Prosite
)
end_cd_contents_multiline()
(in
_RecordConsumer
)
endDocument()
(in
LAX
)
ExPASyDictionary
(in
Bio.Prosite.Prodoc
)
end_cd_tag()
(in
_RecordConsumer
)
endDocument()
(in
CheckGood
)
ExPASyDictionary
(in
Bio.SwissProt.SProt
)
end_conservation_relations
(in
Bio.MetaTool.metatool_format
)
endDocument()
(in
Dump
)
expect
(in
Bio.expressions.blast.ncbiblast
)
end_conservation_relations()
(in
_RecordConsumer
)
endElement()
(in
_XMLparser
)
expected_records
(in
Martel.test.test_delimiter
)
end_contig()
(in
_RecordConsumer
)
endElement()
(in
ObjectParserHandler
)
EXPFREQ
(in
Bio.SubsMat
)
end_convex_basis
(in
Bio.MetaTool.metatool_format
)
endElement()
(in
DataHandler
)
Explode
(in
Bio.EUtils.DTDs.eSearch_020511
)
end_convex_basis()
(in
_RecordConsumer
)
endElement()
(in
GrabXPathNodes
)
export_fasta()
(in
Nexus
)
end_database_name()
(in
Handle_search_header
)
endElement()
(in
EventGenerator
)
export_phylip()
(in
Nexus
)
end_database_num_letters()
(in
Handle_search_header
)
endElement()
(in
ConvertHandler
)
ExposureCN
(in
Bio.PDB.HSExposure
)
end_database_num_sequences()
(in
Handle_search_header
)
endElement()
(in
RecognizeHandler
)
EXPRESS()
(in
_RecordConsumer
)
end_database_report()
(in
_BlastConsumer
)
endElement()
(in
Dispatcher
)
Expression
(in
Bio.EUtils.Datatypes
)
end_database_report()
(in
_DatabaseReportConsumer
)
endElement()
(in
StoreEvents
)
Expression
(in
Martel
)
end_database_report()
(in
_PSIBlastConsumer
)
endElement()
(in
LAX
)
Expression
(in
Martel.Expression
)
end_date_contents_multiline()
(in
_RecordConsumer
)
endElement()
(in
Dump
)
ExpressionList
(in
Martel.Expression
)
end_date_tag()
(in
_RecordConsumer
)
endElement()
(in
CatchFields
)
expressions
(in
Bio
)
end_db_block()
(in
_RecordConsumer
)
endElement()
(in
Capture
)
extend()
(in
ElementNode
)
end_dbid()
(in
Handle_dbid
)
ending
(in
Bio.expressions.blast.wublast
)
extend()
(in
SeqMap
)
end_dbxref()
(in
Handle_dbxref
)
ending_start
(in
Bio.expressions.blast.wublast
)
extend()
(in
MutableSeq
)
end_dbxref_dbid()
(in
Handle_dbxref
)
EndsWith
(in
Martel.RecordReader
)
extended_dna
(in
Bio.Alphabet.IUPAC
)
end_dbxref_dbname()
(in
Handle_dbxref
)
ENeighborCommandline
(in
Bio.Emboss.Applications
)
extended_dna_letters
(in
Bio.Data.IUPACData
)
end_description()
(in
Handle_description
)
english_abstract()
(in
_RecordConsumer
)
extended_protein
(in
Bio.Alphabet.IUPAC
)
end_description_block()
(in
Handle_description
)
ENTITIES
extended_protein_letters
(in
Bio.Data.IUPACData
)
end_description_contents_multiline()
(in
_RecordConsumer
)
ENTITY
extended_protein_values
(in
Bio.Data.IUPACData
)
end_description_tag()
(in
_RecordConsumer
)
Entity
(in
Bio.PDB
)
extended_protein_weight_ranges
(in
Bio.Data.IUPACData
)
end_descriptions()
(in
_BlastConsumer
)
Entity
(in
Bio.PDB.Entity
)
ExtendedIUPACDNA
(in
Bio.Alphabet.IUPAC
)
end_descriptions()
(in
_DescriptionConsumer
)
entity_levels
(in
Bio.PDB.Selection
)
ExtendedIUPACProtein
(in
Bio.Alphabet.IUPAC
)
end_descriptions()
(in
_PSIBlastConsumer
)
entitydefs
(in
Bio.EUtils.parse
)
external_entity_ref_handler()
(in
DataHandler
)
end_elementary_modes
(in
Bio.MetaTool.metatool_format
)
Entrez
(in
Bio
)
extract()
(in
Bio.PDB.Dice
)
end_elementary_modes()
(in
_RecordConsumer
)
entry_date()
(in
_RecordConsumer
)
extract_keywords()
(in
Bio.SwissProt.KeyWList
)
end_fast_dbxref()
(in
Handle_dbxref
)
entry_month()
(in
_RecordConsumer
)
extract_urls()
(in
ExtractUrls
)
end_feature()
(in
Handle_feature_location
)
Enumeration
ExtractUrls
(in
Bio.NetCatch
)
end_feature()
(in
Handle_features
)
Enzyme
(in
Bio
)
EZRetrieve
(in
Bio
)
Trees
Indices
Help
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