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Provides code to access NCBI over the WWW.
The main Entrez web page is available at: http://www.ncbi.nlm.nih.gov/Entrez/
A list of the Entrez utilities is available at: http://www.ncbi.nlm.nih.gov/entrez/utils/utils_index.html
Documentation for the e-utilies are available at: http://www.ncbi.nlm.nih.gov/entrez/query/static/eutils_help.html
The main Blast web page is available at: http://www.ncbi.nlm.nih.gov/BLAST/
Functions: query Query Entrez; retrieve results in HTML format. pmfetch Retrieve results using a unique identifier. pmqty Search PubMed. pmneighbor Return a list of related articles for a PubMed entry.
efetch Access the efetch script. _open
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Query Entrez and return a handle to the results, consisting of a web page in HTML format. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=helplinks.chapter.linkshelp Raises an IOError exception if there's a network error.
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Query PmFetch and return a handle to the results. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/utils/pmfetch_help.html Raises an IOError exception if there's a network error. |
Query PmQty and return a handle to the results. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/utils/pmqty_help.html Raises an IOError exception if there's a network error.
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Query PMNeighbor and return a handle to the results. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/utils/pmneighbor_help.html Raises an IOError exception if there's a network error.
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Query Entrez and return a handle to the results. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/epost_help.html Raises an IOError exception if there's a network error.
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efetch(db[, cgi][...]) -> handle Query Entrez and return a handle to the results. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/efetch_help.html Raises an IOError exception if there's a network error. |
esearch(db, term[, cgi][...]) -> handle Query Entrez and return a handle to the results. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/esearch_help.html Raises an IOError exception if there's a network error. |
elink([, cgi][...]) -> handle Query Entrez and return a handle to the results. See the online documentation for an explanation of the parameters: http://www.ncbi.nlm.nih.gov/entrez/query/static/elink_help.html Raises an IOError exception if there's a network error. |
Open a handle to Entrez. cgi is the URL for the cgi script to access. params is a dictionary with the options to pass to it. get is a boolean that describes whether a GET should be used. Does some simple error checking, and will raise an IOError if it encounters one.
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