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Registry.RegisterableObject --+ | DBObject --+ | IndexedFileDB
Return SeqRecord objects from an indexed file.
This module deals with both flat file and BerkeleyDB indexes. These indexed files can be created by any of the compliant indexing implementations from Biopython, BioPerl, BioJava, etc...
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data |
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another data type |
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Inherited from Inherited from |
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Intialize with information about loading the database. dbname is the name of the database to open. This will likely be a filesystem path to a database directory.
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Get a list of all namespaces to search for the file under. If given_name is a valid key, then it is returned as the only thing to check. Otherwise, we go forward and check all possible namespaces. |
Do the database retrieval of the sequence, returning a handle.
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