Package Bio :: Package CDD
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Package CDD

source code

Deal with Conserved Domain Database (CDD) entries from NCBI.

Submodules [hide private]

Classes [hide private]
  Iterator
Iterator interface to move over a file of CDD entries one at a time.
  _Scanner
Start up Martel to do the scanning of the file.
  _RecordConsumer
Create a CDD Record object from scanner generated information.
  RecordParser
Parse CDD files into Record objects
Variables [hide private]
  __warningregistry__ = {('Bio.CDD was deprecated, as it cannot ...
Variables Details [hide private]

__warningregistry__

Value:
{('Bio.CDD was deprecated, as it cannot parse recent HTML files from t\
he CDD database. If you want to continue to use this module, please ge\
t in contact with the Biopython developers at biopython-dev@biopython.\
org to avoid permanent removal of this module from Biopython',
  <type 'exceptions.DeprecationWarning'>,
  9): 1}