Package Bio :: Package Application
[hide private]
[frames] | no frames]

Package Application

source code

General mechanisms to access applications in biopython.

Classes [hide private]
  ApplicationResult
Make results of a program available through a standard interface.
  AbstractCommandline
Generic interface for running applications from biopython.
  _AbstractParameter
A class to hold information about a parameter for a commandline.
  _Option
Represent an option that can be set for a program.
  _Argument
Represent an argument on a commandline.
Functions [hide private]
 
generic_run(commandline)
Run an application with the given commandline.
source code
Function Details [hide private]

generic_run(commandline)

source code 

Run an application with the given commandline.

This expects a pre-built commandline that derives from AbstractCommandline, and returns a ApplicationResult object to get results from a program, along with handles of the standard output and standard error.