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Bio.AlignIO support for the "nexus" file format.
You are expected to use this module via the Bio.AlignIO functions (or the Bio.SeqIO functions).
See also the Bio.Nexus module (which this code calls internally), as this offers more than just accessing the alignment or its sequences as SeqRecord objects.
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Returns SeqRecord objects from a Nexus file. Thus uses the Bio.Nexus module to do the hard work. NOTE - We only expect ONE alignment matrix per Nexus file, meaning this iterator will only yield one Alignment. |
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