Package Bio :: Package SCOP :: Module Des :: Class Record
[hide private]
[frames] | no frames]

Class Record

source code

Holds information for one node in the SCOP hierarchy.

sunid       -- SCOP unique identifiers

nodetype    -- One of 'cl' (class), 'cf' (fold), 'sf' (superfamily),
               'fa' (family), 'dm' (protein), 'sp' (species),
               'px' (domain). Additional node types may be added.

sccs        -- SCOP concise classification strings. e.g. b.1.2.1

name        -- The SCOP ID (sid) for domains (e.g. d1anu1),
               currently empty for other node types

description --  e.g. "All beta proteins","Fibronectin type III", 

Instance Methods [hide private]
 
__init__(self, line=None) source code
 
_process(self, line)
Parses DES records.
source code
 
__str__(self) source code
Method Details [hide private]

_process(self, line)

source code 

Parses DES records.

Records consist of 5 tab deliminated fields, sunid, node type, sccs, node name, node description.