Package Bio :: Package config :: Module FormatRegistry
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Module FormatRegistry

source code

Implements a Registry to store Martel-type format expressions.

Classes: FormatRegistry Holds Biopython formats in a dictionary-like interface. FormatObject Describes a Biopython file format. FormatGroup Describes a group of Biopython file formats.

Classes [hide private]
  FormatRegistry
This implements a dictionary-like interface to Biopython file formats.
  FormatObject
This object stores Biopython file formats and provides methods to work on them.
  FormatGroup
This object holds a group of FormatObjects.
Functions [hide private]
 
_parses_file(expression, infile, debug_level) source code
 
_parses_string(expression, s, debug_level) source code
 
_normalize_expression(expression_or_path) source code
 
_load_expression(path) source code
 
_load_object(path) source code
 
_load_first_existing(basemodulename, possible_formats) source code
Variables [hide private]
  formats = formats, exporting 'blast', 'blastn', 'blastp', 'bla...
Variables Details [hide private]

formats

Value:
formats, exporting 'blast', 'blastn', 'blastp', 'blastx', 'embl', 'emb\
l/65', 'empty', 'fasta', 'genbank', 'genbank-records', 'genbank-releas\
e', 'ipi', 'ncbi-blastn', 'ncbi-blastp', 'ncbi-blastx', 'ncbi-tblastn'\
, 'ncbi-tblastx', 'search', 'sequence', 'swissprot', 'swissprot/38', '\
swissprot/40', 'tblastn', 'tblastx', 'wu-blastn', 'wu-blastp', 'wu-bla\
stx'