Bio.AlignIO.FastaIO: This module contains a parser for the pairwise alignments produced
by Bill Pearson's FASTA tool, for use from the Bio.AlignIO
interface where it is refered to as the "fasta-m10" file
format (as we only support the machine readable output format
selected with the -m 10 command line option).
Bio.Blast.NCBIStandalone: This module provides code to work with the standalone version of
BLAST, either blastall or blastpgp, provided by the NCBI.
Bio.Blast.NCBIWWW: This module provides code to work with the WWW version of BLAST
provided by the NCBI.
Bio.Blast.NCBIXML: This module provides code to work with the BLAST XML output
following the DTD available on the NCBI FTP
ftp://ftp.ncbi.nlm.nih.gov/blast/documents/xml/NCBI_BlastOutput.dtd
Bio.Medline: This module provides code to work with Medline.
Bio.MetaTool: Parser for output from MetaTool, a program which defines metabolic
routes within networks.
Bio.MetaTool.Input: This module provides code to convert Bio.Pathway.System objects
into a text file that can be used as input for the MetaTool
program.